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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
total RNA-seq
18
small RNA-seq
11
Hi-C
6
ATAC-seq
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
1
MPRA
Assay category
64
Transcription
11
3D chromatin structure
8
DNA accessibility
4
DNA methylation
Target of assay
3
control
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
84
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bigWig
81
bam
64
tsv
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
3
bedpe bed3+
3
cool
3
hic
2
bigBed narrowPeak
1
txt
Organism
87
Homo sapiens
Biosample type
63
tissue
24
primary cell
1
cell line
Organ
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
epithelium
10
vasculature
9
liver
8
musculature of body
7
kidney
7
pancreas
4
limb
3
artery
pericardium
Project
85
AMP
3
HPAP
Genome assembly (visualization)
78
hg19
70
GRCh38
Lab
85
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
files.file_type!
bed bedMethyl
organ_slims!
pericardium
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
MPRA
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 19 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
cell line
MIN6
1
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