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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
65
Transcription
31
DNA binding
8
3D chromatin structure
4
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
295
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
303
Homo sapiens
Biosample type
226
tissue
77
primary cell
Organ
88
kidney
52
heart
51
musculature of body
46
brain
36
limb
35
connective tissue
27
epithelium
18
ureter
17
vasculature
15
blood vessel
13
adipose tissue
11
liver
8
pancreas
7
eye
5
artery
1
pericardium
Project
303
AMP
Genome assembly (visualization)
281
GRCh38
263
hg19
Lab
303
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
May, 2023
BIOSAMPLE
ASSAY
303 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 47 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
cardiac muscle cell
1
3
+ See 28 more…
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