Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
18
small RNA-seq
9
DNase-seq
8
Hi-C
6
ATAC-seq
4
WGBS
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
66
Transcription
18
DNA accessibility
8
3D chromatin structure
4
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
169
bam
165
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
65
tsv
bed bedMethyl
30
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
166
Homo sapiens
Biosample type
83
tissue
60
cell line
23
primary cell
Organ
61
liver
18
brain
18
connective tissue
17
heart
15
blood
15
bodily fluid
13
adipose tissue
10
blood vessel
10
vasculature
8
musculature of body
7
epithelium
7
kidney
7
pancreas
7
spleen
4
limb
3
artery
1
pericardium
Project
166
AMP
Genome assembly (visualization)
147
hg19
143
GRCh38
Lab
166
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
166 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
liver
4
2
1
2
spleen
6
1
body of pancreas
2
2
2
heart left ventricle
2
2
2
omental fat pad
4
1
1
+ See 22 more…
cell line
HepG2
45
GM12878
15
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 15 more…
See all biosamples
Download