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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
65
ATAC-seq
59
total RNA-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
71
DNA accessibility
23
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
15
control
8
histone
8
histone modification
7
broad histone mark
1
narrow histone mark
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
133
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2018
10
November, 2020
10
October, 2017
9
July, 2019
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
65
bed narrowPeak
64
xls
57
txt
17
tagAlign
12
bam
4
fastq
2
bigWig
1
bedpe bed3+
1
vcf
Organism
268
Homo sapiens
Biosample type
238
tissue
21
cell line
9
in vitro differentiated cells
1
primary cell
Organ
129
kidney
92
heart
17
liver
10
brain
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
269
AMP
Genome assembly (visualization)
119
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
121
AMP-T2D consortium
21
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed bedMethyl
assembly!
hg19
BIOSAMPLE
ASSAY
269 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
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