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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
46
ATAC-seq
6
DNase-seq
1
Hi-C
1
WGBS
Assay category
79
DNA binding
52
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
4
June, 2019
3
July, 2019
1
March, 2020
Available data
155
bam
128
bigWig
113
bed narrowPeak
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
133
Homo sapiens
Biosample type
118
tissue
14
cell line
1
primary cell
Organ
614
liver
523
pancreas
epithelium
326
kidney
258
brain
203
connective tissue
177
heart
166
vasculature
161
blood vessel
114
limb
101
bone element
88
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
23
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
133
AMP
Genome assembly (visualization)
113
GRCh38
79
hg19
Lab
133
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
tsv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
1
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
smooth muscle cell of the brain vasculature
1
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