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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
17
small RNA-seq
6
ATAC-seq
6
Hi-C
4
WGBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
7
DNA accessibility
6
3D chromatin structure
4
DNA methylation
Target of assay
3
control
Date released
675
February, 2021
400
November, 2017
376
August, 2017
373
May, 2021
341
May, 2020
262
October, 2019
183
August, 2021
153
February, 2023
135
July, 2018
130
June, 2019
120
May, 2022
115
May, 2019
81
November, 2018
75
December, 2017
75
July, 2019
74
October, 2018
57
April, 2019
56
March, 2020
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
2
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
75
bigWig
74
bam
58
tsv
bed bedMethyl
16
bigBed bedMethyl
6
bed narrowPeak
2
bed bed3+
2
hdf5
1
bigBed narrowPeak
Organism
75
Homo sapiens
Biosample type
60
tissue
15
primary cell
Organ
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
epithelium
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
75
AMP
Genome assembly (visualization)
66
hg19
64
GRCh38
Lab
75
AMP-T2D consortium
files.file_type!
bed bedMethyl
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 17 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 7 more…
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