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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
6
DNase-seq
6
pCHi-C
4
WGBS
3
small RNA-seq
1
RNA microarray
Assay category
420
Transcription
78
DNA binding
40
DNA accessibility
4
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
55
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
12
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
406
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
548
Homo sapiens
Biosample type
542
tissue
6
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
549
AMP
Genome assembly (visualization)
459
hg19
428
GRCh38
Lab
549
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bedMethyl
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
549 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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