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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
40
DNase-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
Assay category
76
DNA accessibility
71
DNA binding
26
Transcription
4
3D chromatin structure
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
90
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
4
February, 2020
4
July, 2019
Available data
125
bed narrowPeak
121
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
bed bedMethyl
2
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
177
tissue
4
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
129
hg19
101
GRCh38
Lab
181
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
organ_slims!
stomach
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
retina
3
15
3
muscle of leg
7
13
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primary cell
retinal pigment epithelial cell
3
1
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