Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
51
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
32
June, 2019
6
February, 2021
5
May, 2019
4
July, 2019
3
February, 2020
Available data
100
bam
78
bed narrowPeak
77
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
106
Homo sapiens
Biosample type
106
tissue
Organ
867
pancreas
728
liver
648
connective tissue
477
adipose tissue
469
epithelium
345
heart
335
kidney
208
vasculature
204
blood vessel
167
brain
159
bone element
135
artery
106
limb
79
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
82
GRCh38
82
hg19
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
organ_slims!
stomach
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
106 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
27
2
1
5
tibial artery
19
2
1
1
muscle of leg
5
13
muscle of arm
17
gastrocnemius medialis
1
4
+ See 8 more…
See all biosamples
Download