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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
91
Homo sapiens
Biosample type
78
tissue
13
primary cell
Organ
940
pancreas
788
liver
680
connective tissue
518
epithelium
488
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
91
musculature of body
68
blood
68
bodily fluid
60
eye
43
nerve
36
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
69
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bed bedMethyl
organ_slims!
stomach
month_released!
January, 2018
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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