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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
46
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
5
Hi-C
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
99
DNA binding
55
DNA accessibility
6
Transcription
5
3D chromatin structure
1
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
5
July, 2019
4
June, 2019
3
March, 2020
3
November, 2017
Available data
128
bed narrowPeak
121
bam
91
bigWig
78
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
7
tsv
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
167
Homo sapiens
Biosample type
125
tissue
28
primary cell
14
cell line
Organ
599
liver
543
pancreas
387
epithelium
313
heart
kidney
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
127
GRCh38
101
hg19
Lab
167
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bedMethyl
assay_title!
total RNA-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
WGBS
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
1
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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