Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
31
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
pCHi-C
1
DNase-seq
1
WGBS
Assay category
36
DNA accessibility
31
DNA binding
9
Transcription
1
DNA methylation
Target of assay
28
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
4
December, 2018
3
February, 2020
3
November, 2018
2
February, 2021
2
March, 2020
1
January, 2019
1
July, 2019
1
June, 2019
Available data
36
bam
36
bed narrowPeak
11
tsv
10
fastq
4
bigWig
bed bedMethyl
3
bigBed bedMethyl
2
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
79
Homo sapiens
Biosample type
71
tissue
6
primary cell
2
cell line
Organ
284
pancreas
225
kidney
213
epithelium
199
heart
165
liver
122
brain
93
connective tissue
89
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
200
GRCh38
hg19
Lab
79
AMP-T2D consortium
files.file_type!
bed bedMethyl
assembly!
hg19
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
DNase-seq
WGBS
tissue
coronary artery
35
2
1
spleen
8
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download