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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
46
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
62
Homo sapiens
Biosample type
62
tissue
Organ
321
pancreas
219
kidney
217
epithelium
167
heart
167
liver
113
connective tissue
101
bone element
80
blood vessel
80
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
31
limb
25
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed bedMethyl
bigWig
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
9
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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