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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
24
Transcription
7
DNA accessibility
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
213
bam
192
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
26
tsv
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
254
Homo sapiens
Biosample type
239
tissue
15
primary cell
Organ
936
pancreas
786
liver
663
connective tissue
498
epithelium
488
adipose tissue
310
heart
269
kidney
254
brain
227
vasculature
224
blood vessel
159
bone element
139
artery
89
limb
69
blood
69
bodily fluid
53
eye
49
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
254
AMP
Genome assembly (visualization)
187
GRCh38
142
hg19
Lab
254
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedMethyl
month_released!
June, 2019
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
2
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
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