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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
small RNA-seq
4
total RNA-seq
3
Hi-C
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
11
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
16
bigWig
13
bam
11
tsv
3
bed bed3+
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
Organism
16
Homo sapiens
Biosample type
10
tissue
6
primary cell
Organ
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
16
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
16
AMP-T2D consortium
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
16 results
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small RNA-seq
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
frontal cortex
1
1
1
diencephalon
1
1
temporal lobe
1
1
cerebellum
1
cerebellum (Hemisphere)
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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