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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
95
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
Date released
42
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
60
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
61
cell line
43
tissue
8
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
8
T1D
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
104
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
tibial nerve
35
5
1
2
primary cell
peripheral blood mononuclear cell
8
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