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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
60
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
4
bed bed3
4
txt
Organism
85
Homo sapiens
Biosample type
61
cell line
16
tissue
8
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
8
T1D
Genome assembly (visualization)
67
hg19
62
GRCh38
Lab
77
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
60
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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