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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
59
DNA binding
37
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
December, 2018
7
January, 2019
7
May, 2019
7
November, 2018
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
84
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
10
tsv
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
115
Homo sapiens
Biosample type
102
tissue
13
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
84
hg19
66
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
ATAC-seq
RRBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
2
1
1
1
spleen
20
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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