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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
722
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
2
RRBS
Assay category
1227
Transcription
722
DNA binding
470
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
250
August, 2017
229
August, 2021
215
October, 2019
170
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
93
May, 2019
70
November, 2017
66
April, 2019
66
May, 2022
63
July, 2019
47
September, 2023
45
October, 2018
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
36
December, 2017
25
February, 2020
20
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1772
bigWig
1740
bam
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2557
Homo sapiens
Biosample type
2565
tissue
1043
primary cell
578
cell line
357
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
470
pancreas
462
adipose tissue
314
liver
292
kidney
290
heart
239
brain
158
bone element
116
blood vessel
116
vasculature
104
limb
75
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2468
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1840
GRCh38
1743
hg19
Lab
2215
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
2565 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
snDrop-seq
MeRIP-seq
RRBS
tissue
islet of Langerhans
298
58
68
1
7
4
3
1
2
adipose tissue
382
1
3
1
1
liver
167
102
20
2
1
1
1
1
3
kidney
49
21
75
13
64
6
1
1
bone element
84
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