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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
49
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
4
July, 2019
3
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
104
tissue
Organ
887
pancreas
680
liver
646
connective tissue
488
epithelium
465
adipose tissue
365
heart
338
kidney
253
brain
212
vasculature
208
blood vessel
159
bone element
132
artery
104
limb
86
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
1
4
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