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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
921
pancreas
641
connective tissue
509
epithelium
472
adipose tissue
450
liver
340
kidney
333
heart
281
brain
225
vasculature
221
blood vessel
159
bone element
136
artery
121
limb
92
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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