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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
35
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
198
DNA binding
Transcription
36
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
9
February, 2023
5
November, 2019
4
January, 2018
4
October, 2019
2
March, 2020
Available data
164
bam
132
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
242
Homo sapiens
Biosample type
1540
tissue
648
primary cell
545
cell line
242
in vitro differentiated cells
8
stem cell
Organ
83
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
Project
242
AMP
Genome assembly (visualization)
157
hg19
138
GRCh38
4
hg18
Lab
196
AMP-T2D consortium
42
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
17
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bed bedgraph
bedpe bed3+
assay_slims!
Transcription
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
4
1
1
embryonic stem cell
40
5
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
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