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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
48
snATAC-seq
3
Hi-C
Assay category
Transcription
97
DNA accessibility
DNA methylation
3
3D chromatin structure
Date released
60
May, 2022
27
February, 2021
7
August, 2020
3
October, 2022
3
September, 2020
Available data
60
zippedFastqFolder
37
fastq
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
100
Homo sapiens
Biosample type
100
primary cell
Organ
52
epithelium
52
pancreas
Project
100
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2382
AMP-T2D consortium
228
Kyle Gaulton, UCSD
100
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
bed bedgraph
assay_slims!
Transcription
DNA methylation
BIOSAMPLE
ASSAY
100 results
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ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
48
pancreatic alpha cell
29
1
pancreatic beta cell
16
1
pancreatic acinar cell
4
1
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