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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA accessibility
17
DNA binding
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
51
bam
49
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tsv
1
txt
Organism
61
Homo sapiens
Biosample type
49
tissue
12
primary cell
Organ
544
liver
368
pancreas
294
epithelium
262
brain
229
kidney
227
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
83
artery
74
connective tissue
69
blood
69
bodily fluid
61
musculature of body
42
eye
38
nerve
33
adipose tissue
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
52
hg19
47
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bed bedgraph
assay_slims!
Transcription
month_released!
August, 2017
BIOSAMPLE
ASSAY
61 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
WGBS
pCHi-C
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
skeletal muscle tissue
1
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
1
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