Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ATAC-seq
8
Hi-C
6
RRBS
Assay category
14
DNA accessibility
8
3D chromatin structure
6
DNA methylation
Date released
12
February, 2023
8
July, 2019
3
March, 2020
3
October, 2022
1
November, 2019
1
October, 2019
Available data
145
bed narrowPeak
139
bigWig
bam
79
fastq
70
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
1
tsv
Organism
28
Homo sapiens
Biosample type
13
primary cell
12
tissue
3
cell line
Organ
40
liver
28
epithelium
28
eye
23
pancreas
21
connective tissue
20
musculature of body
9
brain
6
heart
6
vasculature
5
blood vessel
5
kidney
4
adipose tissue
4
bone element
4
skeleton
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
25
AMP
3
HPAP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
25
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
4
inconsistent ontology term
files.file_type!
bed bedgraph
bam
assay_slims!
Transcription
BIOSAMPLE
ASSAY
28 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
RRBS
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
+ See 7 more…
tissue
pigmented layer of retina
12
cell line
EndoC_BH1
2
1
See all biosamples
Download