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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
114
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
control
17
transcription factor
11
RNA binding protein
Date released
47
April, 2019
40
May, 2024
35
February, 2023
33
June, 2019
15
May, 2019
14
July, 2019
12
February, 2021
6
October, 2019
5
March, 2020
Available data
191
bed narrowPeak
154
bigWig
121
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
207
Homo sapiens
Biosample type
188
tissue
12
cell line
7
primary cell
Organ
490
liver
414
pancreas
293
epithelium
234
brain
217
kidney
207
heart
164
connective tissue
147
vasculature
142
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
207
AMP
Genome assembly (visualization)
196
GRCh38
118
hg19
Lab
167
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
files.file_type!
bed bedgraph
assay_slims!
Transcription
target.investigated_as!
control
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
3
36
2
heart left ventricle
29
2
3
4
1
1
1
left cardiac atrium
40
1
heart
12
18
1
1
heart right ventricle
11
1
2
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
1
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