Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
47
DNA methylation
Date released
41
May, 2022
17
May, 2021
6
February, 2021
Available data
41
zippedFastqFolder
6
fastq
6
tsv
Organism
64
Homo sapiens
Biosample type
63
primary cell
1
tissue
Organ
47
epithelium
47
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
47
HPAP
17
T1D
Lab
47
Klaus Kaestner, Upenn
17
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedgraph
award.project!
AMP
BIOSAMPLE
ASSAY
64 results
search-icon
table-tab-icon
Clear Filters
WGBS
pCHi-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 12 more…
tissue
thymus
1
See all biosamples
Download