Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
43
DNA accessibility
7
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
112
bam
91
bed narrowPeak
89
bigWig
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
Organism
120
Homo sapiens
Biosample type
120
tissue
Organ
812
pancreas
783
liver
655
connective tissue
484
adipose tissue
381
epithelium
378
heart
328
kidney
281
brain
232
vasculature
228
blood vessel
141
artery
120
limb
81
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
43
nerve
31
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
120
AMP
Genome assembly (visualization)
95
hg19
94
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
bed bedgraph
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
120 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
See all biosamples
Download