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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
Assay category
11
DNA accessibility
Date released
9
February, 2023
2
February, 2021
Available data
2939
bam
2757
bigWig
1553
bed narrowPeak
1425
tsv
1326
fastq
891
bigBed narrowPeak
277
tagAlign
271
bed broadPeak
243
bigBed broadPeak
232
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
hic
16
bedpe bed3+
11
bed bed3
8
csv
bed bedgraph
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
11
Homo sapiens
Biosample type
5
in vitro differentiated cells
4
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
brain
1
liver
Project
11
AMP
Genome assembly (visualization)
11
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent replicate
files.file_type!
bed bedgraph
audit.ERROR.category!
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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