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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
143
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
143
DNA binding
22
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
42
control
42
narrow histone mark
36
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
50
August, 2017
40
May, 2022
38
December, 2017
6
November, 2018
6
October, 2019
3
July, 2019
3
March, 2020
1
February, 2021
Available data
270
bam
251
bigWig
149
tsv
103
bed narrowPeak
70
tagAlign
69
fastq
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
340
Homo sapiens
Biosample type
340
tissue
Organ
340
liver
Project
340
AMP
Genome assembly (visualization)
254
hg19
224
GRCh38
Lab
300
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bed bedgraph
files.platform.term_name!
Applied Biosystems SOLiD System 3 Plus
BIOSAMPLE
ASSAY
340 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
143
20
3
2
1
1
1
1
1
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