Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
Assay category
391
DNA binding
Target of assay
764
histone modification
763
histone
504
transcription factor
391
narrow histone mark
371
broad histone mark
300
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
320
bigWig
317
bed narrowPeak
294
bam
127
tagAlign
123
bigBed narrowPeak
62
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
389
Homo sapiens
Biosample type
324
tissue
primary cell
47
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
38
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
6
artery
5
embryo
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
387
AMP
4
T1D
Genome assembly (visualization)
300
GRCh38
291
hg19
Lab
364
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bed bedgraph
biosample_type!
primary cell
month_released!
February, 2018
BIOSAMPLE
ASSAY
391 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
10
neural progenitor cell
7
hepatocyte
5
pancreatic endoderm
3
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
Download