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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
50
May, 2021
15
September, 2018
14
August, 2017
11
June, 2019
8
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
112
bigWig
104
bed narrowPeak
103
bam
47
tagAlign
40
fastq
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
104
Homo sapiens
Biosample type
266
tissue
104
primary cell
40
in vitro differentiated cells
18
cell line
1
stem cell
Organ
34
epithelium
23
pancreas
7
vasculature
6
blood vessel
5
kidney
5
vein
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
64
AMP
40
T1D
Genome assembly (visualization)
104
hg19
94
GRCh38
Lab
54
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
primary cell
monocyte
40
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
endothelial cell of umbilical vein
5
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