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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
DNase-seq
5
total RNA-seq
4
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
Assay category
13
DNA binding
8
DNA accessibility
8
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
7
control
6
histone
6
histone modification
5
narrow histone mark
3
RNA binding protein
3
transcription factor
1
broad histone mark
Date released
9
July, 2019
9
November, 2017
7
June, 2019
5
December, 2019
4
August, 2021
1
October, 2019
Available data
31
bigWig
29
bam
17
bed narrowPeak
14
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
13
bigBed narrowPeak
9
fastq
8
tsv
4
hdf5
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
626
tissue
401
cell line
35
primary cell
15
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
35
AMP
Genome assembly (visualization)
34
hg19
25
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
primary cell
hepatocyte
4
1
5
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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