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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
Assay category
1227
Transcription
867
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
722
bam
575
bigWig
555
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
860
Homo sapiens
Biosample type
867
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
117
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
865
AMP
2
T1D
Genome assembly (visualization)
550
GRCh38
529
hg19
Lab
867
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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