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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
50
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
1
January, 2018
Available data
50
bam
50
fastq
45
bigWig
44
bed narrowPeak
44
bigBed narrowPeak
Organism
59
Homo sapiens
Biosample type
51
cell line
8
primary cell
Organ
931
pancreas
730
liver
667
connective tissue
510
epithelium
484
adipose tissue
374
heart
347
kidney
281
brain
229
vasculature
225
blood vessel
159
bone element
140
artery
121
limb
92
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
8
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
51
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bedgraph
bigBed bedMethyl
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
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