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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
15
ChIP-seq
Assay category
32
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
12
November, 2017
3
October, 2017
2
November, 2018
Available data
241
bam
220
bigWig
201
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
47
Homo sapiens
Biosample type
36
tissue
11
primary cell
Organ
77
kidney
63
liver
47
brain
45
musculature of body
35
limb
29
heart
21
epithelium
21
pancreas
18
ureter
16
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
47
AMP
Genome assembly (visualization)
46
GRCh38
37
hg19
Lab
47
AMP-T2D consortium
Audit category:
2
missing controlled_by
files.file_type!
bed bedgraph
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ChIP-seq
tissue
brain
14
3
caudate nucleus
1
1
cingulate gyrus
2
frontal cortex
2
middle frontal area 46
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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