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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
98
total RNA-seq
38
ATAC-seq
Assay category
131
DNA binding
98
Transcription
38
DNA accessibility
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
175
May, 2021
45
May, 2020
20
May, 2022
16
August, 2021
7
August, 2020
3
September, 2020
1
October, 2017
Available data
270
bigWig
234
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
267
Homo sapiens
Biosample type
225
primary cell
21
tissue
14
cell line
7
in vitro differentiated cells
Organ
34
liver
11
pancreas
10
epithelium
2
connective tissue
Project
180
T1D
77
AMP
10
HPAP
Genome assembly (visualization)
257
hg19
191
GRCh38
Lab
AMP-T2D consortium
220
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.file_type!
bed bedgraph
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
osteoblast
1
See all biosamples
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