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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
21
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
82
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
663
February, 2021
397
November, 2017
352
August, 2017
280
October, 2019
279
August, 2021
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
114
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
4
March, 2023
3
March, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
113
tsv
89
bed narrowPeak
64
xls
57
txt
45
bam
30
bigWig
20
tagAlign
2
bed bed3+
1
hic
Organism
278
Homo sapiens
Biosample type
227
tissue
42
in vitro differentiated cells
10
cell line
primary cell
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
epithelium
2
pancreas
1
adipose tissue
Project
279
AMP
Genome assembly (visualization)
102
GRCh38
42
hg19
Lab
147
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
files.file_type!
bed bedgraph
lab.title!
Bing Ren, UCSD
biosample_type!
primary cell
BIOSAMPLE
ASSAY
279 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
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