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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
54
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
54
DNA accessibility
Date released
18
May, 2022
14
September, 2018
8
October, 2017
August, 2020
5
August, 2017
5
September, 2017
3
September, 2020
1
March, 2019
Available data
278
bed narrowPeak
175
bam
129
bigWig
64
xls
54
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
54
Homo sapiens
Biosample type
29
tissue
25
primary cell
Organ
49
pancreas
25
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
liver
1
spleen
Project
51
AMP
3
HPAP
Genome assembly (visualization)
49
hg19
35
GRCh38
Lab
31
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
files.file_type!
bed bedgraph
month_released!
August, 2020
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
tissue
islet of Langerhans
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
+ See 2 more…
primary cell
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic acinar cell
5
pancreatic ductal cell
4
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