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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
96
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
96
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
27
bigWig
25
fastq
24
bam
22
bigBed narrowPeak
1
tsv
Organism
96
Homo sapiens
Biosample type
65
primary cell
19
cell line
12
tissue
Organ
145
pancreas
96
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
liver
21
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
54
AMP
42
HPAP
Genome assembly (visualization)
38
hg19
27
GRCh38
Lab
54
AMP-T2D consortium
42
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
files.file_type!
bed bedgraph
month_released!
August, 2020
BIOSAMPLE
ASSAY
96 results
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ATAC-seq
primary cell
pancreatic alpha cell
30
pancreatic beta cell
21
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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