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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
65
ChIP-seq
16
snATAC-seq
1
Hi-C
Assay category
203
DNA accessibility
65
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
19
histone
19
histone modification
12
control
11
narrow histone mark
8
broad histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
711
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
252
bam
240
bed narrowPeak
240
bigBed narrowPeak
240
bigWig
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
35
fastq
Organism
269
Homo sapiens
Biosample type
178
tissue
63
primary cell
28
cell line
Organ
81
kidney
43
musculature of body
35
blood
35
bodily fluid
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
12
pancreas
7
eye
7
spleen
7
vasculature
5
blood vessel
3
liver
2
artery
1
adipose tissue
Project
253
AMP
16
T1D
Genome assembly (visualization)
240
GRCh38
217
hg19
Lab
253
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
inconsistent control
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
269 results
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Clear Filters
DNase-seq
ChIP-seq
snATAC-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
3
5
peripheral blood mononuclear cell
8
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
+ See 18 more…
cell line
GM12878
27
HepG2
1
See all biosamples
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