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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
Assay category
218
DNA binding
86
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
142
February, 2021
91
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
4
February, 2023
2
March, 2020
1
May, 2021
Available data
266
bam
245
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
88
txt
84
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
396
Homo sapiens
Biosample type
379
tissue
17
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
395
AMP
1
T1D
Genome assembly (visualization)
241
GRCh38
198
hg19
Lab
395
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedgraph
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
RNA microarray
total RNA-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
tissue
bone element
84
bone tissue
58
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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