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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
13
control
Date released
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
153
bam
144
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
171
Homo sapiens
Biosample type
162
tissue
9
primary cell
Organ
467
pancreas
317
epithelium
283
liver
229
kidney
227
heart
199
connective tissue
171
brain
163
vasculature
160
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
171
AMP
Genome assembly (visualization)
142
GRCh38
137
hg19
Lab
171
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedgraph
assay_slims!
Transcription
month_released!
November, 2017
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
angular gyrus
15
temporal lobe
15
cerebellum (Hemisphere)
2
1
1
superior frontal gyrus
4
+ See 71 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
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