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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
167
DNA binding
33
DNA accessibility
Target of assay
164
histone
164
histone modification
105
narrow histone mark
59
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
3
October, 2017
2
November, 2018
1
July, 2019
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
200
Homo sapiens
Biosample type
189
tissue
11
primary cell
Organ
429
liver
200
brain
191
heart
183
kidney
181
pancreas
133
vasculature
130
epithelium
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
200
AMP
Genome assembly (visualization)
198
GRCh38
138
hg19
Lab
200
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
files.file_type!
bed bedgraph
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
8
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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