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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
169
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
163
histone
163
histone modification
105
narrow histone mark
58
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
4
October, 2017
2
November, 2018
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
219
Homo sapiens
Biosample type
199
tissue
20
primary cell
Organ
610
liver
569
pancreas
553
connective tissue
413
adipose tissue
280
epithelium
224
heart
219
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
219
AMP
Genome assembly (visualization)
211
GRCh38
156
hg19
Lab
219
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
files.file_type!
bed bedgraph
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
8
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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