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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
4
small RNA-seq
4
total RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
32
DNA accessibility
11
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
46
bigWig
43
bam
33
bed bed3+
31
bed narrowPeak
31
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
11
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
48
Homo sapiens
Biosample type
36
tissue
12
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
48
AMP
Genome assembly (visualization)
42
GRCh38
37
hg19
Lab
48
AMP-T2D consortium
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
48 results
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DNase-seq
small RNA-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
12
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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