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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
50
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
108
DNA binding
60
DNA accessibility
Target of assay
95
histone
95
histone modification
51
broad histone mark
44
narrow histone mark
13
transcription factor
8
RNA binding protein
Date released
49
August, 2017
September, 2018
40
October, 2018
31
November, 2019
18
May, 2022
7
October, 2019
5
September, 2017
4
June, 2019
4
October, 2017
3
March, 2020
3
May, 2021
3
November, 2018
1
May, 2019
Available data
617
bam
551
bigWig
399
fastq
391
tsv
168
bed narrowPeak
80
zippedFastqFolder
77
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
162
Homo sapiens
Biosample type
123
tissue
22
primary cell
21
cell line
2
in vitro differentiated cells
Organ
441
liver
203
brain
191
heart
183
kidney
168
pancreas
133
vasculature
129
blood vessel
116
epithelium
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
164
AMP
4
T1D
Genome assembly (visualization)
166
hg19
142
GRCh38
Lab
150
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedgraph
month_released!
September, 2018
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
20
37
1
1
body of pancreas
26
4
4
pancreas
13
2
1
endocrine pancreas
14
primary cell
pancreatic alpha cell
7
3
pancreatic beta cell
7
3
pancreatic acinar cell
2
cell line
EndoC_BH1
13
1
Panc1
6
1
in vitro differentiated cells
pancreatic PP cell
2
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