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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
22
DNA accessibility
5
DNA methylation
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
6
October, 2019
4
November, 2018
2
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
357
Homo sapiens
Biosample type
357
tissue
341
cell line
15
in vitro differentiated cells
11
primary cell
Organ
544
connective tissue
485
adipose tissue
481
pancreas
357
liver
283
heart
230
kidney
229
brain
158
bone element
127
blood vessel
127
vasculature
82
limb
69
artery
53
eye
41
nerve
31
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
357
AMP
Genome assembly (visualization)
264
hg19
235
GRCh38
Lab
317
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bed broadPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
357 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
right lobe of liver
3
10
1
1
2
1
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