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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
475
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
475
DNA binding
188
Transcription
23
DNA accessibility
6
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
292
transcription factor
106
control
82
recombinant protein
74
histone modification
73
histone
52
RNA binding protein
47
narrow histone mark
26
broad histone mark
18
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
54
August, 2017
50
November, 2018
48
December, 2017
40
May, 2022
30
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
2
March, 2020
1
February, 2020
Available data
655
bam
598
bigWig
449
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
698
Homo sapiens
Biosample type
357
tissue
341
cell line
Organ
916
pancreas
724
liver
673
connective tissue
epithelium
488
adipose tissue
360
heart
275
kidney
236
brain
214
vasculature
212
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
44
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
698
AMP
Genome assembly (visualization)
535
hg19
459
GRCh38
Lab
628
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
assay_slims!
3D chromatin structure
organ_slims!
epithelium
BIOSAMPLE
ASSAY
698 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
3
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
320
14
1
1
2
2
1
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