Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
673
bam
596
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
704
Homo sapiens
Biosample type
342
cell line
336
tissue
15
in vitro differentiated cells
11
primary cell
Organ
761
pancreas
704
liver
649
connective tissue
482
adipose tissue
395
epithelium
316
heart
234
brain
191
kidney
172
vasculature
170
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
36
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
704
AMP
Genome assembly (visualization)
539
hg19
479
GRCh38
Lab
653
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
assay_slims!
DNA accessibility
assembly!
hg18
BIOSAMPLE
ASSAY
704 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
320
14
1
2
2
2
1
tissue
liver
145
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
Download